Exercises and Solutions

Material for all the classes of the ESRs Programming Workshop with the solutions.

Some updates will be made the following days to this page. Stay tuned!

LRZ

Instructions on how to use the supercomputing center of Munich (LRZ).
NOTE: Only for users with account of LRZ. Please visit the website of the LRZ to see if you are elegible for using the systems.

• Installing the VPN
• Connecting
• Modules
• Installing programs
• SLURM Scripts

BASH

Provided in Markdown format and jupyter-notebook.

• BASH Exercises
• BASH - sample data

NGS

• NGS Exercises

R

All the material is provided as Markdowns to be used in RStudio. Please make to use the last version of RStudio and R.

• R Exercises
  • Part 1
  • Part 2
  • Part 3

Python

• Presentation
• Exercises
• Arguments in python

Biopython

Provided in Markdown format and jupyter-notebook.

• Exercises

Pandas

Provided in Markdown format and jupyter-notebook.

• Exercises

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Last Modified: December 14, 2018